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Three models were tested: the simple general linear model (GLM, Naive-model), the structured association model (GLM, Q-model), based on the STRUCTURE output, and the mixed linear model (MLM, K + Q-model), taking into account both the STRUCTURE output and the kinship matrix [ 15].
This work proposes a method to design a fixed structure output feedback flight control law, joining flying qualities criterion with robustness to structured and unstructured uncertainties in the design specifications.
Structure Harvester by Dent Earl provides additional tools for visualizing Structure output.
Earl, D. A. STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method.
Earl, D. A. & vonHoldt, B. M. Structure Harvester: a website and program for visualizing STRUCTURE output and implementing the Evanno method.
Earl, D. A. & vonHoldt, B. M. STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method.
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For each run, 5 independent runs of STRUCTURE were performed with the number of clusters (K) varying from 1 to 11, leading to 55 Structure outputs.
STRUCTURE outputs were also generated by pre-allocating samples to subpopulations as defined by host species and time collected, in order to look for correlation between these parameters and the subpopulation allocation by STRUCTURE.
The software distruct (Rosenberg 2004) was used to plot structure outputs.
The structure outputs were handled using the SIMIL R script collection (Alvarez et al. 2008).
To understand how comparable are the structure outputs based on SSRs and SNPs, the level of membership correlation was investigated assuming five populations.
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