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Rubin did not release the track right away — he tightened up the structure, editing the rhymes so they more closely resembled verses in a song.
The structure sketcher is based on the powerful gesture-based drawing tools originally developed for the MMDS app, which are designed to make touch-based structure editing fast and effective [40].
Calls to JChemPaint, to display structure editing or structure display windows, are handled quite differently.
The complete HTML code listing required to provide a simple interface without structure editing capabilities.
ChemDoodle Web Components (abbreviated CWC, iChemLabs, LLC) is a light-weight (~340 KB) JavaScript/HTML5 toolkit for chemical graphics, structure editing, interfaces, and informatics based on the proprietary ChemDoodle desktop software.
By completely avoiding the need for a Java runtime, the installation of plug-ins and any advanced features in client Web browsers, we were able to provide an extremely portable chemical structure editing system which works on all major Web browsers, even those outdated by nearly a decade, and is entirely operating-system independent.
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Avogadro was already capable of downloading chemical structures from the NIH structure resolver service, editing structures and optimizing those structures.
Pre-docking structure edit was done to add hydrogen residues, remove surface water molecules and to correct deviant bond angles and atoms [36].
The 'DCS delete' mutation, which is predicted to decrease secondary structure, decreases editing at all three paralytic editing sites, while the 'DCS zip' mutation, which increases secondary structure, is known to increase editing at all three sites [ 8].
In order to prepare for the molecular dynamics (MD) simulations, two pdb files, Cys11_80percent.pdb and Cys11_20percent.pdb were generated from the original high resolution crystal structure by editing the atom records for Cys11, generating two separate pdb files, one with the chain C CysC6 CysC11 disulphide in the major (80%) conformation, the other with the minor (20%) conformation.
The double mutation, 'Loop/Dock > α/α', combines these mutations and is predicted to restore the tertiary pseudoknot structure, rescues editing at site 1 and increases editing at all three sites [ 8].
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