Sentence examples for structure as reference from inspiring English sources

We finally computed the root mean squared deviation (RMSD) of the atoms in the main chain of the seven residues (Asn54, Leu56, Gln57, Lys168, Asn176, Thr177, Asp179) that are considered responsible for the extracellular docking of the two connexons (2), taking the corresponding coordinates of the 3.5 Å X-ray crystallographic structure as reference.

Although we used only one ribosomal RNA structure, users of C2A can include different or more crystal structures as reference full atomic structural information.

For evaluation purposes, we used the Rfam consensus structures as reference structures and compared them against the consensus structures predicted by the four tools.

Criterion (2.3) cannot be fulfilled entirely: the risk structures are segmented, drill trajectories are planned, and anatomical structures as well as reference structures are clearly visible.

We may estimate the free-energy differences due to apolar and polar surfaces by taking the native NS structure as a reference state, and referring to the empirical expression  [55]: Δ GSASA =  σapolΔSASAapol −  σpolΔSASApol, where σapol = 49.6 cal mol− 1 Å− 2 and σpol = 19.1 cal mol− 1 Å− 2.

To this end a discriminant analysis was used with sample D (secondary care, multimodal multi-center) [ 38, 39], and its MPI-S subgroup structure acting as reference.

Here EGF domain was deleted from crystallized B-S1 or E-S2 structure, and the two resulted structures (denoted as reference S1 and S2) were equilibrated for 16 and 20 ns, respectively (Fig. 2).

We refer to this energy minimized structure as the reference structure.

Throughout refinement, reference and secondary structure restraints were applied to the ribosomal proteins using the Sc80S structure as a reference model (Nicholls et al., 2012).

Using 2003 population structure as the reference and the mortality data, we estimate cohort-wise the anticipated population structure in 2012 with an assumption of no migration.

In order to study the strain force from the W gate to Si channel, NBD analysis was performed and compared with a crystal part deep inside the transistor structure as a reference point.