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The Fugu draft now contains some 300 million bases arranged in disconnected strings of sequence called scaffolds.
Proteins that have homology may show strings of sequence with perfect alignment, interspersed by breaks or openings where the sequences are not similar or missing.
Sometimes there are strings of sequence that in general show homology but have short regions where the sequence is not identical.
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If using W represents a string of sequence which have N elements, then W = ...
At the genetic level alone, one can conceive of observations that would refute it, such as, a string of sequences in DNA that would be ridiculous to explain by chance or by natural selection" (p. 200).
Strings of oligonucleotide sequences were used to search for microsatellites: 6 repeats for dinucleotide; 5 repeats for trinucleotide; 5 repeats for tetranucleotide, pentanucleotide and esanucleotide.
To identify an enriched motif within Kaiso-binding sites, a motif analysis was performed using HOMER to identify strings of nucleotide sequences that are enriched within Kaiso peaks.
To identify an enriched motif within Kaiso binding sites, a motif analysis was performed using Hypergeometric Optimization of Motif EnRichment (HOMER) software [ 22] to identify strings of nucleotide sequences that are enriched within Kaiso peaks.
Using this approach each Asm file's content is converted to a contiguous string of gene sequence characters.
Finally, an infinite string is rejected tout court if, for every level of significance, there is an initial string of that sequence that we would reject at that level (Martin-Löf 1969: 609).
Although the residues preceding the cyclotide domain are not highly conserved there is a string of conserved sequence flanking the C-terminal Asn/Asp of the mature cyclotide domain.
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