Sentence examples for stringency alignment from inspiring English sources

High stringency alignment (gap = 0, number of mismatch = 0) with e-PCR of primer sequences to the genome sequence was used to map the primer sequences.

This approach allowed high stringency alignments for even short sequences.

We also performed high stringency alignments of our sequences to the S. moellendorffii assembled ESTs [ 35], which showed that MF enriches for transcribed sequences to a similar level as it does for protein sequences, suggesting hypomethylation of expressed sequences.

The hits with high stringencies (alignment score ≥ 1000) were considered as duplications.

Thus, over half the ESTs confirmed CABOG scaffolds by full-length, high-stringency alignments.

Such high-stringency alignments facilitate the identification of chimeric sequences by producing either multimodal or extremely uneven coverage distributions, particularly in combination with our long, merged reads.

Here we report that low-stringency alignments accumulation in predicted amino acid sequences may discern coding from non-coding DNA, thereby providing a new in silico strategy (AnABlast) to reveal present and ancient coding regions in sequenced DNA.

High-stringency alignments against the Selaginella uncinata chloroplast genome [ 32] identified 14.9% and 7.8% chloroplast DNA sequences in the MF and WGS datasets, respectively, thus demonstrating that the S. moellendorffii genome is methylated and that MF selects for non-methylated sequences as expected.

Depending on the stringency of alignment, 16 19% of the transcripts did not have a match among the plant sequences examined.

RelocaTE is written to be easily configurable to flexibly identify elements with differing TSD sizes and varying stringency in alignment scores to find TE containing reads.

Efficiency was favored for jobs with many input sequences, suggesting high coverage that will be sufficient to create an accurate assembly even with high stringencies for alignment.