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The BUB1B-centered STRING network was built using the STRING web interface (version 9.05).
However, STRING has relatively little information on PTM and does not represent phosphorylated protein forms, so we expected that the STRING network would differ significantly from our network.
When applying our Caco-2-specific selection to STRING network the number of edges and nodes was reduced considerably (~50%).
In this paper, we present a computer model based on an elastic string network representation for sail deformation.
The STRING network enrichment results on KEGG pathways.
Actually, the neighbor proteins are in interaction with each other in the STRING network [48].
We also analyzed 4148 Gene Ontology (GO) enrichment score features based on the STRING network context [17].
The enrichment score of one protein's neighbors on a STRING network was defined as the −log10 of the p-value generated by the hypergeometric test.
Meanwhile, with the STRING network
Several alternatives exist to the STRING network including BioGRID, IntAct, IntNetDb, HPRD, and Dip, and we will study the impact on performance of the choice of network in follow-up work.
STRING network online analysis was used for additional evaluation of the enriched protein interaction network.
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