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Exact(9)
Instead of using perfect string matches, reads are mapped to the contigs with SMALT (http://www.sanger.ac.uk/resources/software/smalt/).sanger.ac.uk/resources/software/smalt/
These terms do not have any string matches in SNOMED CT terminology nor can they be expressed using one single SNOMED CT concept.
In database searching, word matches have been replaced by so-called spaced seeds where string matches according to a non-periodic pattern P of match and don't care positions are used (Ma et al., 2002).
In the first of three scrubbing steps, the identifying information in these segments is extracted so it can be searched for within the body of the report via exact string matches.
The extracted text was searched for exact string matches, and for each string of free text within the record we had a flag for whether each of the four keyword groups were present and a word count.
Overlapping binding sites bound by the same TFs were removed, and only string matches with log likelihood score ratio L q > 0.98 and matrix matches with core similarity S c > 90% and matrix similarity S m > 80% were retained.
Similar(51)
The classical ARG and 2D string matching methods are evaluated.
So it requires a high- performance string matching algorithm.
The string matching with swaps problem is the problem of string matching in the presence of local swaps.
The string matching algorithm also calculates the extent to which the strings have matched.
The Myers algorithm is an approximate string matching algorithm.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com