Exact(5)
Here we focus on the effect of violating the central assumption of strict divergence.
In all of these implementations, strict divergence is a standard assumption of the multispecies coalescent.
Strict divergence is a simplifying assumption, one which is violated by the presence of horizontal gene transfer, reassortment, migration or any other means of gene flow.
Under strict divergence, a species is a perfectly mixing Wright-Fisher population until the moment of splitting, and from that point onwards the two sub-species evolve in total isolation.
As with chromosomes, the composition and degree of pseudogenization across pRF plasmids from four R. felis strains (URRWXCal2, LSU, "AUS-Lb," and LSU-Lb) does not show a pattern consistent with strict divergence between flea- and booklouse-associated strains (fig. 2 A).
Similar(55)
In addition, to allow the possibility that stratigraphic assignment of fossil taxa might be incorrect, we relaxed the strict minimum divergence time calibration by using a normal distribution around the minimum date for a particular stratigraphic interval.
Influenza B virus data sets were also simulated under a strict molecular clock using divergence times, substitution rates and other substitution parameters estimated by Physher.
Remonstrant, any of the Dutch Protestants who, following the views of Jacobus Arminius, presented to the States-General in 1610 a "remonstrance" setting forth their points of divergence from stricter Calvinism.
However, it has been argued that this mode of parasite divergence is not strict sympatric speciation, because host shifts likely cause the sudden effective isolation of parasites, particularly if these are transmitted by vectors and therefore cannot select their hosts.
Our IM simulations rejected the strict isolation model of population divergence and provided evidence of historical gene flow between riparian and non-riparian species.
Relaxed and strict clock analyses provided different divergence time estimates for two of these datasets, the Black bass and lice data, in which two or more partitions showed significant rate variation.
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