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The shifting in the peak position and line broadening of the XRD pattern reveals the presence of micro strains in the sample.
For calculation of the genetic diversity and discriminatory ability of typing the Simpson's index of diversity was used,
This general framework is designed to address interpretation issues associated with closely related strains in the sample, low abundance organisms and absence of genomes from the reference database.
This is based on 51 of the 53 ribosomal protein sequences due to the absence of two genes (rpsA and rpsQ) in some strains in the sample group.
Nevertheless, they are essential datasets to use as benchmark for examining the performance of the methods in a situation of closely related strains in the sample.
STB-K and STB-J are the most distantly related M. canettii strains in the sample; genetic distances from these strains are approximately twice the distances between other strains (Supply et al. 2013).
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The results allow for measurements of full field displacements and strains in the samples.
Especially striking was the absence of any ST-17 strains in the samples from the CF patients.
To determine the number of S. aureus strains in the samples, 25% of the yellow-pigmented colonies obtained in each plate of agar 110 medium were further confirmed by catalase and with the Slidex Staph Plus kit.
It was done for specimens deformed to engineering strains of 25%%, i.e., when the cavitation was relatively intensive, but the local strains in the samples were comparable.
Finding at least two distinct viral strains in the samples of the same patient that have not evolved by divergence within that patient implies superinfection.
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