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All Lb. fructosus strains and some more included in different phenotypic groups (17 strains in total) could not be associated with any reference strain (cluster VII).
This unusual co-factor specificity with HMF as a substrate has only been previously reported for one S. cerevisiae strain (TL3/TMB3000) (Nilsson et al. 2005), which was shown, in this study, not to belong to the same strain cluster (Figure 3).
The mean difference of all pairs of sequences linked through the basal node of the M strain cluster was 0.028+/−0.004 nucleotide substitutions/site (ns/s), but only 0.009+/−0.002 ns/s for the D strain.
A strain cluster was defined as two or more patients infected by strains having identical spoligotypes and MIRU-VNTR patterns.
In addition to the STEC outbreak strain (cluster 1), four separate aEPEC clusters (cluster 2 - 5) were found.
However, the strain from Germany was most closely related to the EAggEC strain cluster from South Africa (pattern similarity 85%).
Similar(44)
Sequence analysis of 4 calicivirus positive samples allowed us to identify a strain clustered to Lorsdale virus, one strain clustered with Manchester virus and two strains clustered with London/92 virus.
A dominant strain, Cluster-2, was almost exclusively found in Danes, particular younger-middle-aged males.
The Romans strain clustered with previously characterized S. larvae strains.
Strain clustering and SNP analyses were performed as described (11 ).
With these settings, the reference strain clustered with 100% similarity.
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