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We store expression data and probeset start and stop positions in an ExonArray object by makeExonArray.
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An example is the Chado expression module used for storing expression data such as from microarrays.
It is possible to store gene expression data from Affymetrix one-colour microarrays as well as miRNA expression data from Exiqon two-colour microarrays in the database.
A flat file indexed on TS IDs was used to store TS expression data.
RETINOBASE is designed to store gene expression profiles from microarray experiments.
The system offers a flexible solution to integrate external analysis tools, including possibilities to store transformed expression values (e.g. normalized ratios) and associated parameters derived from statistical evaluation.
We are currently working on a database to store preprocessed expression data derived from different tissues and cell types, in order to enable the identification of marker genes associated with a set of samples of interest in a convenient and fast way.
We considered AD as a case study and obtained results from the supervised analysis of three publicly available datasets: one that collects the abundance of 120 signaling proteins [ 4] and two, retrieved from the Gene Expression Omnibus (GEO) database, that store gene expression data from DNA microarray experiments: GSE1297 [ 5] and GSE5281 [ 6, 7].
However, data for any organism or tissue can be stored in the database; the schema used is equally suitable for storing gene/protein expression data and networks for any biological system.
In Drosophila, loss of INDY (I'm Not Dead Yet), the homologue of mammal SLC13A5, confers extended lifespan in a caloric restriction-like manner (Rogina et al., 2000) with reduced whole body fat stores and expression of insulin like proteins (Wang et al., 2009).
Images were collected and stored for expression analyses.
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