Sentence examples for store alignment from inspiring English sources

The POA software [ 51] uses the partial order graph format to effectively store alignment information.

BAM files are not designed for wiggle graphs, and are more complex than BED files, but they do store alignment, sequence and sequence quality information very efficiently.

Indices [1, N] and [1, M] in each matrix, respectively, are used to store alignment scores while indices 0, N + 1, and M + 1 are used for the convenience of filling the matrices and tracing back.

AR-0.73, while substantially reducing the CPU cost of shape similarity searching, adds concomitant demands on storing alignments to the reference shapes that must be available during the search.

The BAM (Binary Alignment/Map) file format [ 9] is a generic and highly compressed format for storing alignments.

CUDA-SWf thus stores the alignment data of each thread in the local memory.

We precompute and store the alignments of all the references with all the database networks.

In our index, we store the alignments between all the reference and database network pairs.

Motivation: The sequence alignment/map format (SAM) is a commonly used format to store the alignments between millions of short reads and a reference genome.

These tools receive as an input alignments of each read produced by a mapping program and use methods for variable length integer coding, such as Huffman coding, to efficiently store the alignments.

For all the BESs from a species, we stored the alignment position(s) on the chicken genome assembly, the length of the alignment in nucleotides, the distance along the chicken alignment between both ends in the case of a PBH, and the E-values associated with alignments.