Sentence examples for stop alignment from inspiring English sources

Existing alleles were translation-aligned between start (alignment start) and stop (alignment end) codons, those containing a frameshift or stop codon were removed, and the modal consensus sequence was exported.

From the URL, users retrieve a summary of the search with the number of sequences that had matches with the database selected, an excel file containing the best match, any known function, match organism, match length, percent identity, expectation value, alignment length, and start and stop alignment positions.

Thus, the start and stop of the alignment and the sizes deduced from electrophoretic motility were used to define the ends of each sra gene.

The commitment component emphasizes the articulation of personal values and making the commitment to take action (i.e. to stop smoking) in alignment with these values [ 13].

The observed value of zero stop codons per alignment had a frequency of 0.007 in the parametric simulations under no selection for ORF maintenance.

Thus, in cases where it is desirable to query low %_PERF_ALIGN values, we developed a further index, "%_STOP_DIST", (Table 1) allowing to assess the possible presence of a stop in the alignment (see examples in Table 1).

In these cases, alignment stops when both axes become parallel (limbs become parallel on standing films).

Search of stop codons in alignments, AT/GC ratio, mean pairwise genetic distances (min-max, overall d-distance) [ 16], and codon based Z-test of neutrality (Nei-Gojobori method with Jukes-Cantor correction and 1000 bootstrap replications) were made using MEGA version 5.2.

Because the endpoints of extensions are not known, we heuristically use twice the bandwidth during extension as used between fragments, and a simplified version of the well known 'X-Dropoff' heuristic (Zhang et al., 1998) which stops extending an alignment when the score for the current extension is more than X below the best score for a shorter extension.

Aligned sequences with unexpected stop-codons, ambiguous alignments, and/or shorter than 200 bp were discarded from further analysis.

But the advantages of grid computing don't stop with this dynamic alignment.