Sentence examples for stochastic alignment from inspiring English sources

Both time and space complexities of stochastic alignment are O (n 2 l 2 ).

Two steps of MSARC algorithm: stochastic alignment and iterative refinement follow the respective steps in Probalign [ 7].

In a preprocessing step, following Probalign [ 8], stochastic alignments are calculated for all pairs of sequences and consistency transformation is applied to resulting posterior probabilities of residue correspondences.

Third, stochastic pairwise alignment may be based on equations (5 - 8) (i.e. stochastic version of classical Gotoh algorithm) or equations (6) and (7) may be replaced with equations (9) and (10), respectively.

The concept of stochastic (or probability) alignment was proposed in [ 14].

There are several non-biological causes that could cause discordance, such as imperfect sequence alignment, stochastic error related to gene length (discussed above), and model violations.

Here, we describe a Cytoscape app based on GASOLINE (Greedy And Stochastic algorithm for Optimal Local alignment of Interaction NEtworks), a greedy and stochastic algorithm for multiple local alignment of PPI networks, introduced in.

Speech-input translation can be properly approached as a pattern recognition problem by means of statistical alignment models and stochastic finite-state transducers.

Finally, a stochastic ordering test showed an alignment between the GDs who attributed higher relevance to information and communication technologies and advanced technologies for sustainability and the adoption of formal sustainability strategy.

Figure 5 shows the predicted structure of the 4-taxa alignment using our Stochastic Topology HMM (STHMM).

The methods for RNA motif discovery can be loosely classified into four categories: (i) Stochastic (ii) Stem-based (iii) Alignment-based, and (iv) Miscellaneous.