Sentence examples for step in the alignment from inspiring English sources

The first step in the alignment algorithm is to find the most similar template sequence for each unaligned candidate sequence.

Application of the homology HMM is the final step in the alignment procedure, shown as step 8 in Figure 2. The alignment algorithm has been implemented in the progressiveMauve program included with Mauve v2.0 and later.

The centroid size, i.e. the scaling factor from the size-removing step in the alignment of landmark configurations, was found to differ significantly between the 'shell' and the 'no shell' group and between the 'shell' and the 'ground' group.

On the contrary, SEAL is able to parallelize all steps in the alignment.

Similarly, Oliver et al. [ 23, 24] distributed the pair-wise alignment of the first step in the progressive alignment, where all pair-wise alignments are computed, on FPGA.

Multiple sequence alignment was the first step in the phylogenetic analysis; alignment quality may have a significant impact on the final phylogenetic tree [ 54, 55].

This could crucially improve the runtime of multiple-alignment algorithms, as calculating guide trees becomes the most time-consuming step in progressive alignment if the number of sequences grows.

Next, in STEP-2, the alignment confidence score c xy (i, j) of the symbol pair (x i, y j ) is updated based on the scores of its two neighbors (x i -1, y j -1) and (x i +1, y j +1).

The first step performs a pre-detection of signatures alignment, and in the second step the alignment is corrected and the signatures are detected by a matcher.

The most computational intensive step in the classification process is the alignment.

In the next step we refine the alignment between homologues in PALI database, obtained through a recognized rigid body method, using match of protein blocks in the local structurally variable regions.