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The curve arising when expression levels are estimated from abundance within the EST database, Figure 2, shows an unexpected non-monotonic behavior, increasing in the region of lowly expressed genes and decreasing in the region of highly expressed genes, in evident conflict with the data stemming from microarray experiments.
Information theoretic approaches are increasingly being used for reconstructing regulatory networks from microarray data.
Our results have being obtained from microarray data, but similar effects are expected to be found in RNA-Seq assays.
Gene function can be inferred from microarray data analyzed by bioinformatics methods such as cluster analysis.
Largely, expression profile of NCX genes obtained from microarray data corroborate with MPSS data.
The genomic features were derived from microarray data and gene ontology.
Plant researchers can use MAMA to predict cis-motifs from microarray data on a single treatment.
The described method allows us to better utilize the information available from microarray data with survival outcomes.
* predicted from microarray data and motif search.
Relatedly, some of the differences between co-expression networks may stem from noise in microarray data related to cross hybridization and the fact that the Populus data come from multiple species within the genus.
Third, the authors suggest, in the Conclusions, that the popular notion of the prohibitive noisiness of microarray data stems from the deterministic view of biological data, in other words, disregard of intrinsic, biological noise (to me, this looks like better terminology than that used by the authors).
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