Sentence examples for state of loop from inspiring English sources

To sample the intermediate state of loop protrusion in the TibC TibA complex, steered molecular dynamics (SMD) simulation (Isralewitz et al., 2001) was carried out with one unit of TibC12 TibA6 complex.

Applying the techniques of the nonlinear dynamics, we have calculated the effects of the inherent loop time delay in determining the state of the loop.

In the FMN-bound state of MmNQO, loop F is folded around the monophosphate moiety whereas in the FAD-bound state of SmMdaB, the F-loop is folded away to accommodate the adenosine ring.

It is clear that the conformational state of the loop depends on the particular form of the cofactor present at the active site and is functional to the reaction trajectory of the aminomutase reaction catalysed by GSAM [ 15, 17].

To test this hypothesis further, we next used immunodetection to probe the phosphorylation state of activation loop S181 in native sequence and interfacial mutant IKK2mono enzymes after incubation with Mg and ATP.

Simple loops for synchronous models can again be divided into two subclasses: (1) where any two consecutive states of the loop differ in exactly a single gene expression and (2) where at least two consecutive states of the loop differ in more than one gene expression (1010→1100 in Figure 3c).

The researchers measured an energy difference between the two states of the loop, a sign the current was a quantum superposition and not simply flipping directions.

Our calculations explain the coexistence of DFG-in and DFG-out states of the loop and reveal different components (e.g., configurational entropy and enthalpy) that stabilize the apo p38α conformations.

The free energy ΔGi of a conformation i is given by the equality

The proposed approach is non-intrusive to the state-of-the-art adaptivity loop and can adopt any state-of-the-art online change detection algorithm through its plug-and-play abstraction.

Nonetheless, the ordered vs disordered state of the β7−β8 loop in chains A and B, respectively, may be linked to enabling retention of the hydrolyzed substrate in the active site.