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At the time we started these analyses, Regulon DB contained 584 experimentally detected σ70 promoters.
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In this context, a prospective retrospective analysis is defined as the prospective analysis of a new biomarker hypothesis that was not prespecified at study start; these analyses are conducted on banked tumour samples from a clinical trial [ 16].
Before starting the analyses, we filtered the data.
All samples were de-identified before starting the analyses.
Therefore, we have chosen to start the analyses at 3 months of age.
The starting point for these analyses was the analysis after correcting for errors and employing alternative assumptions ('EAC amendments').
Our starting point for these analyses was a list of 4.3 million inferred heterozygous positions in the original Sanger sequencing data for the reference animal [ 23].
The starting point for these analyses is henceforth referred to as operating day 0. Measurement of total gas production, biogas composition, pH, total solids (TS) and VS was performed as described previously [ 61].
The starting point for these analyses is a set of orthologous groups from OrthoMCL (2003), a database of clustered orthologous groups that includes taxa from 105 whole genomes including E. histolytica, E. dispar, and E. invadens.
The starting point for these analyses was the identification of all patients designated as being in need of PC (it should be noted that not all persons who may require PC are identified as needing it in the databases, nor are all people who use PC services included in the databases).
The researchers used data from 2009 because they started their analyses in 2010 when it was released.
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