Sentence examples for start of the alignment from inspiring English sources

The aligned scaffold region and 200 bp upstream from the start of the alignment were extracted.

However, with our rules, the shift in start positions allowed one deletion at the start of the alignment, meaning that the read was classified as correctly mapped, which reflects reality.

When the first pass is completed, the best scoring cell will provide all the necessary information for reconstructing the alignment: the start of the alignment, the intersection with each cut-point, and its end, which is the cell itself.

These were BLAST searched against each of the other genomes, and subgroups were selected in which the start position of the alignment between the query and subject sequences was > 10 amino acids apart.

Frequently, the start coordinates of the alignments are used to eliminate duplicates like in SAMtools, adding a criterion to keep the best read among the duplicates.

Thus, the start and stop of the alignment and the sizes deduced from electrophoretic motility were used to define the ends of each sra gene.

Because detailing all work concerning sample acquisition, preparation and sequencing is beyond the scope of this publication, we omit this 'wet lab' part of the data flow and start with the alignment of the raw sequencing data as specified in the GAL process (see Figure 3).

As some of Jean's intimates know, she was worried sick, right from the start, that the alignment of political forces was such that "Karmel," despite having the right impulse, was constructing the wrong machinery.

In this approach, a consensus string is formed for each profile, which is constructed for each of the possible sets of starting locations in the alignment of the sequences.

The following parameters were considered (see explanatory Figure  3): i) ratio of alignment length to oligo length (percent alignment); ii) maximum number of mismatches; and iii) distance from the start of oligo/transcript alignment to oligo 5' end.

Based on the above data, in order to define an high confidence pool of probes for eggplant, we selected a reasonable tradeoff between stringency and number of preserved probes: i) ratio of alignment length to oligo length >= 0.6; ii) maximum number of mismatches <= 2; iii) start of oligo alignment within the first 20 bases from 5' oligo end.