Sentence examples for star genome from inspiring English sources
In this study we used the STAR genome aligner12, however, similar analysis may be achieved using the 'new tuxedo' pipeline13.
B) The map of the TransibSU-1_PM copies identified by Censor [ 26 ] in the Bat star genome.
For increased alignment accuracy, the STAR genome index was generated to include splice junction annotations with the options '—sjdbGTFfile Homo_sapiens.GRCh37.70.primary_assembly.gtf —sjdbOverhang 49'.
In the assembly of the recently sequenced Bat star genome, we identified a contig encoding a protein (PMRAG1L) that is 50% identical to SPRAG1L.
Even though the number of opsin genes is higher in the brittle star genome, opsin diversity (in terms of represented opsin classes) is higher in the sea-urchin genome with representatives in every classical opsin groups.
Our results demonstrate that Gsx, Xlox and Cdx are clustered in the sea star genome, a situation radically different from what we have seen in the sea urchins [ 7].
Fastq data for RNA-seq were aligned using RSEM with the following parameters (rsem-calculate-expression –paired-end –star –output-genome-bam)42.
Star: a Whole Genome Duplication event (WGD).
Additional file 2: PMRandL and PMRAG2L genes in the the Bat star Patiria miniata genome.
MB carried out the cross genome STAR element comparison, and designed the methodology for this portion of the study.
By mapping 120 bp of the flanking sequence surrounding each SNP on to scaffolds of ATLCOD1A build of the cod genome (Star et al. 2011) using BLASTN with an e-value threshold of 1−10, 133 additional SNPs could be anchored (for a total of 899 of the SNPs) on to specific linkage groups (LGs), although the position within LGs (in cM) could not be determined for these SNPs.
