Sentence examples for standards of annotation from inspiring English sources

In this article, we discuss methodologies and standards of annotation as well as tools used by four annotation teams at the following three centers: J. Craig Venter Institute (11), Welcome Trust Sanger Institute (WTSI) (12) and The Arabidopsis Information Resource TAIRR) (13).

Thus we do not think that the striking differences in network size between the parasites and the non-parasites were artefacts due to the different standards of functional annotation in the analyzed proteomes.

By utilizing these resources as a baseline for comparison, we could determine how well the automated procedures employed by Genotator compared to standards of manual annotation, both in terms of coverage of published research as well as in terms of prioritization of gene candidates.

The bioinformatic processing of RNA editing is currently impeded by lack of a standard for annotation of editing sites in the primary database sequence accessions.

For the TAIR evaluation, we instead compared the time spent manually curating the gold-standard set of annotations with the time spent annotating the same papers using Textpresso and found an ∼10-fold decrease in the amount of time spent in annotating when using Textpresso.

To allow the direct estimation of biologic relevance, an effective annotation of microarray experiments is a major task that has been approached by the MGED group (Microarray Gene Expression Data Group, www.mged.org), which defined the standards for annotation and publication of microarray experiments.

These rules are imposed to ensure a better standard of genome annotation, however, they do mean that often the output of an automatic annotation pipeline must be manually checked and altered prior to publication.

Manual annotation of individual gene product sequences from the literature provides the gold standard of functional annotation, but it is a time-consuming approach.

A standard set of annotations is required for our SVP annotation approach (Table 1).

Such a standard specification of annotations for reactants and reactions has recently been published in the form of the SBO.

In this study a classifier was trained using Gene Ontology as a gold-standard set of annotations and validated with an independent dataset of localization annotations.