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The PIP system has become the standard pipeline design for subsea field developments, especially for deep water fields.
User should be aware of this limitation when comparing the output of this tool to data produced by the standard pipeline.
We present a new source extraction algorithm based on morphological mathematic, which has been tested and is currently under implementation in the standard pipeline.
The data obtained by CfA PIs will be reduced by the Telescope Data Center TDCC) unless the spectrograph operation mode is inconsistent with the standard pipeline or unless the PI wishes to reduce his or her data.
Sequence data were processed using QIIME following the UPARSE standard pipeline according to Brazilian Microbiome Project ((http://www.brmicrobiome.org/#!16s-profiling-pipeline-illumina/czxl)41, 16s-profiling-pipeline-illumina/czxl 41resentative sequences.
FreeSurfer's standard pipeline was used (i.e., recon-all ).
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Software used in this study is available as standard pipelines on Firehose.
This would be similar in outcome to the adoption and sharing of standard pipelining protocols [24] made available for tools such as Pipeline Pilot [25] or KNIME [26].
The combination of this general concept with the extensive scripting functionality of the Cactvs Chemoinformatics toolkit results in a system with capabilities notably different and more flexible than standard pipelining systems.
The resulting files (BAM and VCF) output by ClinSeK are substantially smaller than those obtained from standard pipelines.
HTS analysis usually proceeds through standard pipelines such as those described in Altmann et al. (2012), which are predicated on single samples.
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