Sentence examples for staged alignment from inspiring English sources

Bowtie2 options are used where alignment scores are set to be equal to the number of base matches minus three times the number of base mismatches (down-weighted if they are lower quality base calls), with a gap open penalty of 2 and a gap extension penalty of 3. A staged alignment procedure is employed to accelerate read mapping and alignment.

Staged alignment of high throughput sequencing data, where reads are first aligned to the transgene sequence and then only orphaned mates of those reads are aligned to the host genome, simplifies the analysis such that a single cluster of mapped reads indicates a clean insertion, whereas two clusters in close proximity can indicate a deletion in the host genome.

However, in the later stage, alignment may be controlled by the crowding effect [10].

These procedures typically consist of two stages; alignment rules and combination rules.

Here event segmentation and classification become a single inference problem and the Viterbi stage alignment automatically yields the event sequence for continuous video streams.

Hierarchical IA has been extended for dense deployments of pico cells by a multi-stage alignment process with a decrease in per user capacity performance [21].

Asymmetry analysis consists of two main stages: alignment of the images and detection of asymmetry through a bilateral image subtraction [ 17].

To limit these variables, a whole embryonic culture [ 30, 31] was adopted, including stage alignment based on somite number, in which the pattern, amount and concentration of alcohol and embryonic staging were controlled.

Class II patients benefits the most from the stage of space closure, while class I patients benefits the first stage (alignment and leveling) of treatment in psychological disability and psychological discomfort domains.

With respect to psychological discomfort and psychological disability domains, class II patients benefits the most from the stage of space closure, while class I patients benefits in the first stage (alignment and leveling) during treatment.

IUM reads generated from this process will be put into the next stage, heuristic alignment stage.