Sentence examples for splice edge from inspiring English sources

Edges correspond to transcribed intervals (exonic edge) or to spliced-out intervals (splice edge).

To aid in correct splice edge definition, HMMSplicer uses an assumption about the biology of splice sites.

The weight of the splice edge is the number of reads that support the splice.

ACT-Graph edges and weights: (i) a splice edge is inferred from a spliced alignment.

The field TYPE tells if the line describes a node, a splice edge or an exonic edge.

The weight of an exonic edge is its average coverage over the genomic interval it spans, and the weight of a splice edge is the number of reads that include the splice.

To perform the adjustment, both splice edges are moved an equivalent number of nucleotides to reach a canonical splice site, where possible.

When considering the problem of image splicing detection, the spliced edges vary with the selections of the coefficients in (2).

In contrast, our methods are based on generative probabilistic models of both RNA-Seq data and isoform frequencies with splice graph edges weighted by parameters representing RNA processing conditional probabilities.

Finally, identical junctions are collapsed into a single junction and all junctions are scored, filtered by score, and divided by splice-site edges, with canonical (GT-AG and GC-AG) junctions in one result set and non-canonical edges in a second result set.

In the literature, transcripts have been mostly represented as paths in an acyclic directed graph with exons as nodes and splices as edges, e.g. Heber et al. (2002) and Sammeth's Flux Capacitor (http://flux.sammeth.net/capacitor.html).html