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The tissue bank specimens were annotated with clinico-pathology information and taken from patients with breast cancers larger than 2 cm who had surgery at our institution.
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27 Specimens are annotated with deidentified, high-quality data from the Hawaii Tumor Registry of the NCI SEER program including demographic and clinical information and survival through 2012.
The parent specimens are annotated with warm ischemia time which, when reviewed in conjunction with RNA and DNA quality metrics, can assist a lab manager in determining whether the standards for specimen quality are being met.
That specimen was annotated in 1992 as "Begonia lacei C. Y. Wu, sp. nov. ined.," by the late Prof. Zhengyi Wu, renowned botanist of the Chinese Academy of Sciences.
The position of each biopsy specimen was annotated on the MRI by translating the 3 coordinates of the needle track from the TRUS to the MRI.
Contigs were annotated as above.
Called SNPs were annotated with SnpEff software54.
Protein domains were annotated with InterProScan (v5.19 85.
Identified variants were annotated using Oncotator.
Both datasets were annotated by experts.
Four peroxiredoxins were annotated in B. pumilus.
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