Exact(5)
Unfortunately, information on these roles is not specified in the database.
First we performed primer extension assays to determine their transcription start sites using primers corresponding to +109 and +122 of PSMD8 and WBP11 respectively, relative to the TSS specified in the database.
A final diagnosis was not specified in the database for two lesions.
A target-sequence database was generated, including all the possible transcripts for a given gene specified in the database.
When comparing interactions from the HHPID against TM, we used the Entrez gene IDs as specified in the database and cross-referenced TM entities with Entrez Gene HIV-1 and human gene names, gene symbols and gene synonyms.
Similar(55)
However, previous ontology literature has paid limited attention to the representation of specific relationships among metadata and the design of reasoning procedures that would allow some information not explicitly specified in the databases or ontologies to be inferred.
As described below, transcription factor binding sites (TFBSs) were predicted by positional weight matrices (PWMs) from the TRANSFAC database [39] in murine promoters specified in the TRANSPro database [40].
It cannot be discerned clearly enough to be specified in the TCD database records because, while journal authors will typically explain the context and objectives of multiple assays, patent applicants often do not.
To characterise the frequency of Pbx-Hox KR motifs in different gene loci, we used the CONDOR CNE set, in which CNEs are grouped according to gene locus as specified in the CONDOR database [ 57].
We directionally constrained such reactions only when such constraints were supported by constraints in the iND750 and iMM904 reconstructions and by the directionality specified in the BioCyc database [ 5].
Then, we added all annotated genes as nodes to the GOGraph, based on the instances specified in the GO database, leading to a graph consisting of both types of nodes, which is referred to as a GOGeneGraph.
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