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A new rule, compromising between β and β/2 for each specific repeat orbit, is proposed, based on the average maximum distance between subsatellite points over the achievable latitudes.
Redundant sequences were removed, forming a specific repeat database for each species.
Specific repeat sequences, such as SBRS1-3, anonspecificfic repeat sequences, such as SSR and rDNA, may be potential genome or chromosome markers.
Interestingly, our primary decision in marker choice was based upon high informativeness value (Fst), and not the specific repeat structure of the MSAT (i.e. dinucleotide vs. tetranucleotide).
Specific repeat types examined for difference in fragment length densities.
Specific repeat numbers are noted in figure captions.
Similar(29)
Gene-specific repeat instability is responsible for >36 human diseases.
For each individual species, these annotated de novo repeats were combined with the Nipponbare repeat library to form a species-specific repeat database.
Like all known centromeres, those of rice are made up of centromere-specific repeat sequences interspersed with a variety of retrotransposons (Nagaki et al. 2004).
In order to identify and classify the repetitive elements in different species, RepeatMasker, in conjunction with each species-specific repeat database, was used.
This relatively low estimate reflects our inability to mask all white-tailed deer repeats given the absence of a complete species-specific repeat library.
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