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For other species, the reference genome is a similar but distinct strain.
For many species, the reference genome is not completed to the same standard as the human genome; many species have only a draft genome or, as discussed for barley, no reference genome.
Similar(58)
In each of the three divisions we designated one species as the "reference" species.
This is due to the different number of organism specific experiments and the evolutionary distance between the species and the reference species.
However for plants even A. thaliana has rather limited annotation of SPs, so in order to increase the plant dataset size we used other species as the reference species in some cases.
Hence, functional similarity between 2 species can be easily determined by the OrthRate index (defined in Methods) by using 1 species as the reference model species.
According to the analyses of [38], PCR success obtained for marker transfers are correlated with the divergence times observed between the targeted non-model species and the reference model species.
In addition to the identification of a recipient species, they suggest a donor species, in the reference tree or outside of it.
As A. callidryas is the most resistant species in this study, gene modules were defined in this species as the reference.
None of the species-specific probes cross-reacted with any non-target species among the reference strains or clinical isolates.
Conversely, the sequenced genomes of closely related species can be used to predict microsatellite locations in the genome of a target species lacking the reference genome sequence [ 22].
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