This site allows the sequences of the seven gene fragments of a query strain to be entered and for the species assignment to be returned, according to its position within an assigned species cluster on the reference tree.
Clusters defined by the GMYC analysis were then assigned an STU I.D. based on the geographic location and species assignment of the accessions they contained.
An ITS2 sequence was considered as paralogous if it was assigned to a clade (or clades) that conflicted with the species assignment based on chloroplast marker(s) and morphology.
Although almost all her composite figures appear to be female, gender assignment — even species assignment — is often unstable.
Species assignment was assisted by using single-photon vacuum-ultraviolet (VUV) photoionization (PI MBMSS.
Here we designed a novel "pVI rapid typing method" to obtain quick, simple and cost effective species assignment for Adenoviruses, thanks to combined fusion temperature (Tm) and amplicon size analysis.
Species assignment is very important in the context of fisheries research, fisheries control, and consumer protection.
However, the properties of ITS2 as a marker clearly make it a suboptimal choice for species assignment in Symbiodinium.
In conclusion, MLSA combined with CGH is a powerful method for studying species assignment within the E. cloacae complex.
Bayesian species assignment was also tested, and resulted in correct assignment to species and subspecies in all instances.
The test set for this framework contained 173 sequences and the 122 indicator vectors made correct species assignment in all cases.
