Exact(3)
Instead, the SNS method requires only sparse read depth (as few as 2 million uniquely mapped 76 bp single-end reads) evenly distributed along the genome.
Andolfatto et al. (2011) and Xie et al. (2010) presented the first tools for GBS for artificial populations based on HMMs for sparse read coverage data.
While regions of sparse read mappings may indicate the presence of a deletion, these methods suffer from high false-positive rates originating from regions that cannot be sequenced or mapped with reads and inherent biases in the choice and assembly quality of the reference genome.
Similar(57)
We present a simple method, named Rock Band, to exploit sparse long read datasets within a short-read assembly to resolve repeats and extend contigs.
We present a method for comparing sparse shotgun read data from two samples to determine whether the two samples originated from the same individual.
A key challenge with microbial identification by metagenomic nanopore sequencing is that the current accuracy of sparse nanopore reads is insufficient to allow confident species identification of bacteria, fungi, or parasites, which have much larger genomes and share more conserved genes than viruses.
You've read to sparse crowds before?
Read the full article here What we say: "People have said that LP1 is a sparse record.
In particular, how downstream areas can read out a sparse code is still not known.
This step generates a sparse similarity matrix between the read sequences and the protein sequences, with species as columns, reads and contigs as rows.
A sparse, lilting reading of Paul McCartney's "My Love".
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