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In addition, Fig. 8 reports the absolute values of errors of the compared tested SFFTv3 and the DFTCOMM algorithms for N = 8192 and k s = L o = 50 under the same sparse computing scenarios.
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In our benchmarks, compared with LocARNA, the much faster SPARSE computes alignments of similar quality with improved folding quality.
By making the following two assumptions, SParSE computes candidate biasing parameters such that when multiplied to k (0), they may satisfy (7).
Despite the identical ξ, SParSE estimates computed with k and k ′ will differ if the proportion of occurrences of is not the same in the two arrays.
We also show that the novel heuristic for handling over-perturbing parameter sets enables SParSE to compute biasing parameters for a class of rare events that is not amenable to current algorithms that are based on importance sampling.
The number of samples generated for SSA simulations with URS equals the total number of SParSE ensembles computed for a specific simulation scenario, which is the sum of the following quantities: the number of intermediate event computations, the number of estimates computed for each intermediate event, and the number of estimates computed in the exponential interpolation stage.
In the next section this problem is automatically solved by combining the genomic genetic effect g with the polygenic effect a. We also note that the determinant equals where A22 - A21 A12 is easily obtained from A-1, and the determinant can be computed using sparse matrix computation.
In the case of the sparse PLS, extensive computing is not required since the pair-wise association are only computed for the variables selected by the approach.
R code for computing Sparse Laplacian Eigenfunctions is available at http://galton.uchicago.edu/~junzhang/LAPSTRUCT.html.edu/~junzhang/LAPSTRUCT.html
The matrix A is very sparse, and thus computing ε ′ A ε is fast.
Chaudhuri et al. (2007) apply an iterative conditional fitting method for computing sparse covariance matrices from arbitrary undirected graphs.
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