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Therefore, we will implement Adaptive-Miner on Flink to check performance in comparison to Spark implementation in future.
A preliminary benchmark result of our Spark implementation processing up to 5,000 images in parallel was shown, and the computing time needed to process all the 150,000 images was also provided.
Speedup of our Spark implementation as a function of the number of cores on the cluster node, using a sample of 1,000 (blue) and 5,000 (orange) images.
As a preliminary but illustrative result, we show in Fig. 7 the speedup (the ratio between the execution time on multiple cores and the execution time on single core) of the image classification algorithm in our Spark implementation, as a function of the number of cores within a single node when 1,000 (blue), and 5,000 (orange) images were processed in parallel.
Given that the Spark implementation (unsurprisingly) outperforms the Hadoop implementation, we then focus on the Spark implementation.
We investigated the worst-case performance of such a naïve parallel implementation of the redistribution component and compared with our proposed implementation (using a Spark implementation).
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For machine learning tasks, Spark ships with the MLlib [60] and GraphX [61] libraries and the latest version of the Mahout [62] library offers a number of Spark implementations as well.
It has sparked implementation of nature-based solutions, such as mass tree planting efforts to sequester carbon and improve air quality.
We used a parallel spark based implementation of the signature descriptor [25] and set the consecutive signature heights 1 3, i.e., an atom at a distance of max 3 edges.
The data are stored in Parquet, a columnar data storage using Avro serialized file formats that reduce I/O load by providing in-memory data access for the Spark pipeline implementation.
We benchmarked our method and the Spark-VS implementation, screening HIV-1 protease receptor against the whole SureChEMBL library [23] downloaded in ready-to-dock format from ZINC.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com