Sentence examples for space refinement from inspiring English sources

This asymmetric unit was refined using the 'real space refinement tool' in COOT followed by three rounds in Phenix43 and four rounds in REFMAC42 with non-crystallographic symmetry constraints imposed.

Besides, the design space refinement can improve the accuracy of surrogate model and reduce some poor performance points in the Pareto front.

An additional Phenix real space refinement step was done to generate the final filament model, and for this step the DNA was held fixed as a rigid body so only protein conformation was optimized.

The objective of this work is the development of a space refinement algorithm based on the method of lines to solve systems of non-linear parabolic partial differential equations.

The subdivided data sets were also processed by using the modified version [7] of the iterative helical real space refinement (IHRSR) method [28] resulting in another two reconstructions per condition.

The iterative helical real space refinement (IHRSR) method [28] is a hybrid approach that uses real-space, single-particle processing and imposition of helical symmetry in an iterative manner.

Optimal convergence under both time and space refinements is shown as well as the convergence of the probability density functions with the number of stochastic realizations.

Rebuilding and real-space refinements were done in Coot (Emsley et al., 2010) with reciprocal space refinements in PHENIX (Adams et al., 2010) and validations in MolProbity (Lovell et al., 2003).

This model was refined by real-space refinement (phenix.real_space_refine) in Phenix (Adams et al., 2010), with stereochemical and secondary structure constraints applied.

In the second phase, these candidate peptides are refined in both the original and the 'flipped' orientation using the real-space refinement engine from Coot (Emsley et al., 2010; Joosten et al., 2008).

Afonine, P. V. et al. Real-space refinement in PHENIX for cryo-EM and crystallography.