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In graph-based chemical space, compounds are typically simplified into their molecular scaffolds [33].
In this space, compounds are represented by their elemental formula.
In the PCA space, compounds that are close to the known active compounds are selected as the candidate hit compounds.
Third, despite the size of the commercial compound space, compounds containing some rather simple core fragments are lacking.
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It is not without flaws, most notably cramped space compounded by intrusive display tables that cornily resemble looms.
The sole problem is one of space compounded by location.
It is therefore interesting to note that although gels can be formed by form A of butylene spaced compounds 1 and 2, gels are not formed by the isostructural hexylene-spaced analogues.
Only one polymorph is associated with gel formation for all of the hexylene spaced compounds studied, whereas in the butylene spaced compounds 1 and 2 both forms A and B can give rise to gels.
Fig. 4 Chemical space of compounds naturally separate into two distinct clusters.
Figure 4 Self organizing map of the chemical space of compounds considered colored by properties.
The application of a model-based encoding allows an efficient comparison of the conformational space of compounds.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com