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The high non-prediction rate probably because PANTHER uses the source of sequences and structures more strictly than PolyPhen and SIFT and the reference data are not sufficient.
In the future, a core of epsilon proteobacteria may become available as a source of sequences to build a Tryptophan Congruency Group.
The source of sequences was Phytozome v7.0, except for Lotus japonicus, which was from PlantGDB (http://www.plantgdb.org/LjGDB/, last accessed January , 27 2014.
Moreover, with the advent of next-generation sequencing (NGS), the availability of an up-to-date source of sequences related to GMOs is crucial for the molecular characterization of GM events.
Sequencing of key organisms from taxonomic outgroups relative to the ones with complete genome sequences available will be a crucial source of sequences that will allow a revaluation of gene ancestry.
These localized structural variations offer a rich source of sequences to mine for possible functional consequences, and to further our understanding of the mechanisms of copy number variation during genome evolution in plants.
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The complete sequence of C. chloropyga mtDNA described here will be a useful source of sequence information for general molecular and evolutionary studies in Diptera.
Here, we show that randomization of a single protein represents a reliable alternative source of sequence diversity that is essentially free of phylogenetic bias.
Recently sequenced buckwheat floral transcriptome was used as source of sequence information.
Intracellular viral RNAs of infected MRC-5 cells served as the source of sequence analysis.
This hypothesis plus that the shifted intron positions were located in the extracellular variable domain let us to check if intron exon sequences could be implicated as a source of sequence variability by producing expansion or contraction of exons length.
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