We have shown by this study that, although our library was constructed with the same method such cDNA libraries represent a valuable source for attaining transcripts with complete coding sequences.
There are, however, six transcription factor genes where non-constitutive introns are annotated as the sole source of transcript variation and for three of these, F23F12.9, zip-1 and atfs-1, the evidence is strong with many ESTs in support.
This notion is supported by a recent molecular analysis of TRCs from LNs and sites of inflammation and tumors, where TRCs were a source of transcripts for IL-7 and CCL19/21 and of angiogenic factors.
Our pursuit of the following experiments was generally motivated by the practical goal of evaluating the validity of using isolated nuclei as a source of transcripts for gene expression studies, but was also coupled to an interest in a more-detailed understanding of the transcriptome.
The evidence from various sources for exons (transcript sequences, homology, conservation) and against exons (repeats) was integrated towards a set of consensus exonic regions.
Having transcript measures from different tissues from the same individuals allowed us to evaluate, for each transcript, sources of transcript level variation within and between individuals (Fig. 1).
There is currently no available source for noncoding soybean transcripts.
TE sequences can be a rich source for natural antisense transcripts that regulate gene expression of many sense targets leading to the complex regulatory networks in the genome.
TVEyes used BBN's speech-to-text tools as one of its sources of transcripts for tveyes.com, podscope.com and the company's enterprise offerings (it has several companies from which it aggregates transcripts and compares them).
The database is an open and flexible source for extracting and comparing transcript profiles (expression pattern of a transcript across conditions) according to individual research objectives.
