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The core regions were sorted into clusters according to their pair-wise nucleotide sequence identity using the program GROUPER (unpublished software, 2004; Armstrong, JS and Gibbs, AJ) with a clustering cut off point of 85% identity.
Discordant reads were sorted into clusters then separated into subclusters that supported the same rearrangement junction.
Further analysis revealed that these 24 highly expressed novel miRNAs could be sorted into Clusters I through VI.
The conformers are sorted into clusters, the cluster having the largest size is removed from the conformer pool, and the algorithm is run again on the remaining conformations.
These complexes are sorted into clusters based on the root mean squares (RMS) cluster tolerance (2.0 Å used in this work) between structures.
The aligned sequences were sorted into clusters, where each cluster contained one or more reads with unique sequence (Additional files 1, 2).
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Previous studies comparing the genomes the complete DNA sequence of reasonably small numbers of phages that infect the Mycobacterium group of bacteria have found that the phages can be sorted into 'clusters' based on similarities in their genes and where these are encoded in their DNA.
For example, closely-related Escherichia spp. can be sorted into different clusters, whereas different Salmonella spp. can be clustered with Escherichia spp. Therefore the algorithm was improved to take into account the variability of test results in Enterobacteriaceae by maximal utilization of relevant biochemical information for isolate clustering.
The researchers found that 63 (25%) reported neurological symptoms that could be sorted into three clusters: memory and sleep problems; reasoning problems, confusion and dizziness; and muscle pains and fatigue.
The 254 included proteins were sorted into 12 clusters representing the corresponding biological processes.
The inductive subcategories were sorted into meaningful clusters within the theoretical categories [ 28].
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