Sentence examples for sorted files from inspiring English sources

Only the sequences that uniquely mapped are reported in export or sorted files.

Sorted files were then processed in Neuroexplorer to extract unit timestamps and relevant event markers.

To identify potentially new exons and/or transcripts in introns and intergenic intervals, uniquely mapped reads were converted into sorted files in BED format using SAMtools and BEDtools (13, 14).

Subsequently the sorted files of information generated from transcriptome sequencing and gene based SNP identification were interlinked into a single database using Microsoft Access available for public use at (http://www.csrl.ars.usda.gov/psgd/index-sorghum.aspx.html).html

7246 lines were read and 7914 lines were written to the sorted file.

This saves one compression write read step in the common case in which a duplicate marked position-sorted file is needed later in the pipeline, and two such cycles if a duplicate marked read-id grouped file is also needed.

SAMtools was applied to convert the resulting.sam-file to a sorted.bam-file and to call the variants in that.bam-file.

We then converted the SAM file into a sorted BAM file using SamTools (Li et al. 2009).

The SHA1 checksum on the sorted output files was recorded.

Bedtools [ 67] was used to create count tables of the sorted bam files using reads aligning to RefSeq defined exons.

Pre-aligned sorted.txt files from the Illumina CASAVA 1.7 pipeline were utilized in the interest of quick turnaround for our users.