Sentence examples for some pathway databases from inspiring English sources

Furthermore, the transcriptional regulatory information on particular transcription factors was totally absent from some pathway databases.

Despite the GPKB integrates all data publicly available on the FTP sites of the reference Entrez Gene and GOA databases, as well as of some relevant gene pathway databases (i.e. BioCyc, KEGG and Reactome), by using the transitive relationship approach we could detect and transfer numerous gene pathway and biological function (Gene Ontology) annotations not included in these databases.

14, 15 However, because of the potential knowledge bias of existing pathway databases, some critical genes may well not have been annotated for their functions and associated pathways.

In addition, some cellular network or signaling pathway databases have systematically collected pathways associated with specific diseases reported in the literature [ 28, 29].

Construction and completion of flux balance models from pathway databases.

Karp, P. D. Pathway databases: a case study in computational symbolic theories.

One focused on curated biological pathways, using the following pathway databases: Reactome68, Panther69 and BioCarta (http://www.biocarta.com/).

Hence, over 70% of the genes were annotated using protein sequences, domains and pathway databases.

(C) Upper: The 141 upregulated and 82 downregulated CNOT2 target genes identified in (A) were analyzed for overrepresentation in the KEGG and GO pathway databases using a Fisher's exact test, the top 5 pathways are displayed.

The species-specific pathway databases and reference pathway databases were downloaded from their respective online sources and implemented for online comparative analysis.

Column-3 includes mirrors of reference pathway databases namely the EcoCyc (E. coli), MetaCyc and PlantCyc.