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aThese values are likely considerably erroneous due to the crossing of bands in some alignments confusing the averaging of VS and ILS, and the vast effect alignment has at this low separation.
This is in agreement with previous observations showing that some alignments are more difficult than others [10], [20].
Some alignments were of low quality due to the insertion of too many gaps in the novel sequence.
Also, this procedure can accommodate for possible misalignments at the intron-exon border where some alignments occur that crosses by a few base pairs the intron-exon boundary.
For correct definition of the consensus boundaries, the scoring function is designed to allow extension of the consensus, even if shared by some alignments, but not all.
Therefore, the poor resolution of the MrBayes consensus trees is because some alignments had too few informative sites and because many of the clades supported in one tree were not supported in all trees.
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BFAST and some alignment tools have been implemented to align two base encoded reads generated on the ABI SOLiD platform.
Through some alignment of the stars, last Sept. 11 found both the White House and the Supreme Court in alpha mode.
Some degree of ordering is also noted perpendicular to this, i.e. in the direction of the film thickness, indicating some alignment of the polymer/counter ion complex.
The tool was designed to impart a degree of shear during the injection process in an attempt to achieve some alignment of the MWCNTs in the flow direction.
Modern archaeoastronomers realize that, with enough stones to work with, one can always find some alignment that is correlated with something celestial.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com