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Preparation of stock and working solution of substrates, incubation conditions, and analytical parameters for assays.
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At this point, the solution of substrate (nutrients) is fed into the reactor, without the removal of the culture fluids.
After 20 days of pre-culturing on a shaker (100 rpm) and 16 hours of photoperiod at 25 ± 1°C, a solution of substrate (100 mg in 1 mL of acetone) was added to each flask through a 0.2 μM membrane filter and the flasks were placed on a shaker for 10 days.
After 15 days of pre-culturing on a gyratory platform shaker at 100 rpm and with a 16 h photoperiod at 25 ±1°C, a solution of substrate (100 mg in 1 mL of acetone) was added to each flask through a 0.2 μM membrane filter and the flasks were placed on a shaker for 20 days.
Method B: Hydrogenation: Pd/C (10%%) was added to a solution of substrate in THF/MeOH (1 1).
Method D: Removal of the TIPS protecting group: Tetra- n-butylammonium fluoride (TBAF; 1 m in THF) was added to a solution of substrate in THF.
In addition, the transfected cells could be labeled and imaged a second time by incubating the sample with a fresh solution of substrate.
A stock solution of substrate (10 mg N-succinyl-LLVY-7-amido-4-methyl coumarin in 600 μl dimethyl sulphoxide) was diluted 1 : 1000 in 100 m M Tris/HCI, pH 8.0, for use.
Morpholine⋅BH3 (505 mg, 5 mmol), BBE solution (105 μL of a 354 μ m preparation; final conc. 0.05 g L−1) and a solution of substrate 1 e (150 mg, 0.5 mmol; final conc. 10 m m) in DMSO (5 mL) were added, and the mixture was shaken at 37 °C and 150 rpm.
Enzyme was dissolved in 50 mM Tricine buffer (containing 10 mM CaCl2 and 400 mM NaCl), pH 7.5, to give 0.8 units/mL (according to the supplier's activity data); a 2 mM solution of substrate FALGPA was prepared in the same buffer.
The preparation of stock and working solutions of substrates was shown in Additional file 1: Table S2.
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