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Of these, 123 (14.3%) showed differential expression when HMEC and MSSM cells were analyzed using the AtlasImage software (ratio >2 and difference in adjusted intensity > 540), and 101 were deemed significant genes with SAM (q-value: 0.7298, median #FDR: 0.73718) (Additional file 6).
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With Opsware's software, that ratio can be sharply reduced, to one person for 50 to 150 computers.
Therefore scattering is usually included in terms of scattering coefficients which are assigned to each surface telling the software the ratio between the part of the reflected energy which is not being reflected specularily and the total reflected energy.
Thus, column four, BP Speedup, shows the factor of speedup (software:hardware ratio) for only the backprojection operation.
As suggested by the software, the ratio of maximum response (9.523) and minimum response (4.444) has been found as 2.143, no transformation is required.
Raw spot values were normalized using the software's ratio option according to the following equation [ 17- 19]: with central tendency being the mean of spot s.
Genetic bottlenecks were detected in three populations (Bayramiç, Edirne 3, Jena; Table 1) when using the software M RATIO, but the software BOTTLENECK did not detect any recent decrease in effective population size.
Several factors may be responsible, including the genetic constitution of different mapping populations, mapping strategies, number and type of mapped loci, the choice of mapping software and ratio between number of markers and population size [ 64- 67].
Using Stata SE for Windows (Stata Corporation, College Station, TX, USA) statistical software, odds ratios (OR) and 95% confidence intervals (CI) were calculated.
Using PAML software, the likelihood ratio test was applied to examine the following two hypotheses: (1) the K A / K S ratio was significantly higher in the branch of interest than in the background branch (tests B and D in [ 17]) and (2) positive selection acted on the branch of interest (improved branch site model; test 2 in [ 18]).
For these reasons, accredited laboratories shall validate likelihood ratio software in accordance with the above norm.
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