We present a mechanism, so called transformational pattern system, and show how it can combine human made decisions and intentionally vague and incomplete rules to perform a transformation.
The well-known ZINC database and related web-based software suite [8] stores about 500, so called, chemical patterns, that speed-up substructure searches and allow estimation of molecule reactivity.
So there's an engineering function called pattern making that translates that three-dimensional object into a series of two-dimensional shapes cut out of cloth.
Ditto for the weird, cantilevered Pumpkin House in Washington Heights, so called because the pattern of its windows suggests a jack-o'-lantern face, and the pseudomedieval walls below the Castle Village apartment towers.
This results in a periodic model, since even for a so called random tread pattern there is a periodicity corresponding to one tire revolution.
Calculating so called "optimal seed patterns" becomes a challenge for long seeds [12].
This response is activated by the presence of so called pathogen-associated molecular patterns (PAMPs) that are sensed by Pattern Recognition Receptors (PRRs), for instance the Toll-like receptor (TLR) [ 7].
Jomon means "cord pattern," so called because pottery decoration was accomplished by pressing twisted cord against the soft clay before it was dried and fired, creating patterns of dashes on the surface, often occurring in parallel lines.
The success of linkage mapping in Mendelian traits led to great optimism that the same approach could be harnessed to identify genes in disorders or traits without clear Mendelian inheritance patterns, so called complex or quantitative traits.
Toll-like receptors (TLRs) are expressed on many cells and signal the presence of so called pathogen associated molecular patterns found, for example, in bacterial cell wall material and viral nucleic acids.
Within the network, clusters of genes with similar expression patterns, so called modules, were then inferred using a clustering of the Topological Overlay Matrix (cutreeDynamic method; deepSplit = 2, minimal module size = 40, merging similar modules with parameter cut height = 0.2).
