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We analyzed data using single SNP analysis and a novel SNP set enrichment analysis (SSEA) developed to discover clusters of associated SNPs.
However, complex hexaploid wheat genomes makes high throughput SNP analysis more difficult and therefore more research is needed to identify the best platform for high throughput SNP analysis.
The origin of the isogenic controls was confirmed by SNP analysis (Supplementary Table 2 35.
Moreover, Single nucleotide polymorphisms (SNP) analysis confirmed strong correlations between two out of the three isolates.
However, conventional PCR based SNP analysis methods still require intact primer binding sites for target amplification.
Of these variants, single SNP analysis revealed that CFH rs572515 was the most significantly associated with AMD risk (P < 10^-6).
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β i is a 1 × 1 (1-SNP analysis) or a 3 × 1 (3-SNP analysis) vector of SNP allele substitution effects, fitted as fixed effects.
Alcina, A. et al. Tag-SNP analysis of the GFI1 EVI5-RPL5 FAM69 risk locus for multiple sclerosis.
Yang, J., Ferreira, T., Morris, A.P. & Medland, S.E. et al. Conditional and joint multiple-SNP analysis of GWAS summary statistics identifies additional variants influencing complex traits.
YDHS contains analysis tools for deeper Y-SNP analysis.
We refer to this as allele-based single-SNP analysis.
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