Manual validation of the annotations acquired for this small subset of sequences of Medicago truncatula confirmed the high quality of the functional inference processing tool.
It follows that the small subset of sequences in the in vivo libraries that contain positioning signals may be derived from those nucleosomes that have not been subjected to repositioning by transcription, epigenetic mechanisms or chromatin boundary effects.
Comparison with other tools, which are not available for downloading and hence with which it is not possible to perform an extensive benchmark, was assessed on a well-annotated small subset of sequences extracted from Uniref50 (release 13.0, March 2008).
A small subset of sequences have a putative COX2_TM Pfam A domain, but the model significance is too low for inclusion in the sequence architecture.
During this process, we detected a small subset of sequences that are related to STEVOR proteins but do not have a high enough HMM score.
The small subset of sequences found in prokaryotes belong to organisms absent from the OrthoMCL database, which would have eliminated the DUF2419 family from the output of our phyletic query.
While a small subset of sequences derived from ERVs may play a positive role by providing regulatory signals or encoding exapted proteins, proviral integration events are more likely to compromise host fitness.
Whereas the unconditional K a / K s uses the whole dataset to estimate the rates of amino acid mutations (K a ) and synonymous mutations (K s ), the conditional K a / K s for a mutation Y conditioned on another mutation X is by definition limited to the small subset of sequences that contain mutation X.
In this study, motif 2, 5, 1, 3 and 6 specifying the NAM subdomain A to E respectively were present in most of the NAC family members in Populus, whereas a small subset of sequences did not have all five motifs in the typical NAC DNA-binding domains.
These datasets comprise a smaller subset of sequence, with fewer repetitive elements, intron or intragenic sequences that make assembly of full genomes difficult.
