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The complex model predicts actual data with slightly greater accuracy than the simple model, as indicated by an approximate 0.05 increase in the R2 value and an 8.5% increase in the 95% CI (data not shown and Figure 3D).
Of the non-verbal tasks, the novel-AV task tended to be performed with slightly greater accuracy than the shape-VV task.
We found slightly greater accuracy for 2-class than one-class using our feature set, but this was not generally true using different feature sets (see Table 2).
This essentially means that slightly greater accuracy with RR-BLUP can be achieved by replicating alleles across individuals, but the advantage isn't nearly as great as it is for OLS.
The different methods for generating G matrices, compared with Bayesian methods to estimate marker effects, resulted in a slightly greater accuracy of nonlinear models in some simulations (VanRaden 2008).
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For most traits, GBLUP20 resulted in slightly greater accuracies than GBLUP0, although this advantage was greater (12%) for gestation length, while for conformation at weaning, GBLUP0 was 13% more accurate than GBLUP20 (Table 2).
For most traits, slightly greater empirical accuracy was achieved with GBLUP20 than with GBLUP0, which confirms the results reported by [ 21].
An exception is the accuracy of the approach 'GLASSO_20' (proposed by Gaspa et al. (2012)) which was 0.853 for trait 2. Although this is slightly greater than the accuracy obtained by BLUP|GA, the accuracy of 'GLASSO_20' was 0.778 for trait 1, and was absent for trait 3. Hence we did not compare BLUP|GA with 'GLASSO_20' in Table 5.
You can also bend several of these together to make a throwing star which might be slightly heaver and have greater accuracy.
For the RANDOM scenario, the number of QTL underlying a trait had a limited effect on prediction accuracies; accuracies were slightly greater for QTL with a very low average MAF (~0.03) or extremely low average MAF (~0.07) when 1000 QTL instead of 100 controlled the trait.
However, in terms of correlation coefficient, imputation accuracy was slightly greater for crossbred animals than for Yorkshire pigs, but slightly lower for crossbred animals than for Landrace pigs.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com