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The size of mappings, defined as the distance between the HSPs in the D. melanogaster genome, is highly variable, ranging from high-resolution mappings of ∼70 bp to low-resolution mappings up to 20,000 bp.
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Although accuracy on the number-mapping task and size of compatibility effect were both significantly correlated with MRS, these two measures were not significantly correlated to each other (r = .13, p = .40).40
With an increased size of atoms the number of possibilities (possible mappings) scales with O(n!), where n is the number of heavy atoms.
All these results are extended to large classes of mappings with values in a metric space, including Sobolev mappings and BV-mappings.
This summary does not distinguish between two mappings if one can be continuously deformed to the other; thus, only equivalence classes of mappings are summarized.
Thus, both directions of mappings are utilized.
The correct mappings column provides the number of correct mappings in the alignment, whereas the ratio column provides the ratio of the number of correct mappings to the total number of mappings produced by the alignment.
The ratio of the correct mappings to the total number of mappings of the alignment is almost 6%.
Finally, summaries of mappings are provided as extendable tree-views, which organize mappings by identified EC numbers.
The decision to create multiple external mappings to EFO classes clearly presents additional overhead to both the initial set of mappings and the subsequent maintenance of these mappings, as both are labor intensive if performed manually.
Note that the ratio does not normalize the number of correct of mappings with coverage but rather with the total number of output mappings.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com