In Figure 3 (see also Additional file 7, Table S4) we show the p-values for the presence of CtrA binding sites upstream of analyzed genes.
> -wrap-foot> To highlight the correlations observed, the predicted sites of PTMs analyzed in this study were mapped onto the modeled 3D structure of the plant protein IAA-amino acid hydrolase from A. thaliana (Fig. 5).
Data collected from all articles included title, authors, journal, year published, country, description of patients, anatomical sites of cancers analyzed, type of sample (formalin-fixed, paraffin-embedded versus fresh frozen), HPV detection method, sample collection period, overall number of head and neck cancers analyzed, and number of cancers that were HPV+.
The procedure searched for the conserved regions identified in the 59-be sites of previously analyzed vibrio strains (5': TAACAA, 3': GCGTTA).
For all matrices used the fold occurrences of the c-Myc binding sites of the analyzed promoters in total are increased in comparison to the fold occurrences of the c-Myc binding sites of the control gene promoters in total.
We identified potential binding sites for transcription factors relevant to asthma near the CpG dinucleotide sites of IL1R2 analyzed (Additional file 2: Figure S2) which could explain the inverse correlation between methylation and gene expression [ 19].
Moreover, 11 proteins exhibited significant changes in the phosphorylation of analyzed sites (Table 1).
* *For ease in comparison of frequencies across categories and strains, we divided the number of polymorphisms by the number of analyzed sites and multiplied that number by 10.
a The total number of sites analyzed (excluding sites with alignment gaps) was 401 (pP42F) and 1090 pP899).
Again, the similarity of the avian spectra is striking, even if the total number of analyzed dendritic sites was not identical in all sections.
