Sentence examples for sites estimation from inspiring English sources

To create a phylogeny, we first tested which amino acid substitution model provided the maximum likelihood tree with the best AICc value (Akaike's information criterion value, corrected for samples size) and further tested whether gamma distribution estimation and/or proportion of invariable sites estimation improved the AICc value using Phyml [ 60].

Modifications of the study protocol lead to the repetition of: cohort definition by criteria, approaching the country feasibility managers and sites, estimations collection and finally comparison of these estimations to a recruitment goal and necessary cohort size respectively.

We also propose a novel approach to assess the two-step method by comparing it with the at-site estimation method with a series of reduced length of observations.

Nielsen [ 18] suggested a method for site-by-site estimation of rate factors by a Maximum Likelihood approach.

Application of the binding site estimation suite of tools (BEST) discovered 179 conserved sequence motifs within the corresponding promoters.

In contrast, per site estimation of d N/d S reveals statistically significant selection signatures in different residues with d N/d S ∼ 1.5.

Although the proposed framework is designed for at-site FFA, this approach can also be applied to regional FFA because regional estimations ideally include at-site estimations.

Weighted estimations of whole-site NO3− removal based on denitrification hot spots were higher than site estimations based on average denitrification rates, suggesting that studies using the latter approach may be underestimating NO3− removal at the landscape level.

The Bayes trees were constructed with the MrBayes [ 35] Geneious module using the HKY85 model with gamma distribution and invariable site estimations, gamma categories of 4, chain length of 50,000, heated chains at 4, subsampling frequency of 10, and a burn-in length of 1000.

In the branch-site model, positively selected branches (selection test among lineages) and sites (selection estimation at codon level within a protein sequence) were estimated by marking one branch as foreground and other five as background.

Recent studies have attempted to optimize the configuration of sample sites for estimation of the variogram by the usual method-of-moments.