Exact(3)
In separate runs, each of the three branches Zm, Po, and LCA were marked as foreground branches and the branch site test for positive selection was applied (see Additional file 4).
To each orthologous gene cluster, the branch site test for positive selection in CODEML (test 2, [ 46]) was applied, using the evolutionary model that allows for a varying ω within the alignment and thus is sensitive towards positive selection limited to a very small number of sites.
Specifically, the branch site test for positive selection identified two genes related with fatty-acid metabolism to be under positive selection in the Arctic fox: a) the Glycolipid transfer protein domain containing 1 (GLTPD1) [ 23] and b) V-akt murine thymoma viral oncogene homolog 2 (AKT2) [ 24].
Similar(57)
Recently, the Sierra Club, at its own expense, had our office space, located six blocks east of the World Trade Center site, tested for mercury contamination.
The MOQI was one of 7 program sites in the United States, with specific interventions unique to each site tested for the Centers for Medicaid and Medicare Services (CMS Innovations Centerr.
We also split our data and ran site tests for positive selection for each group analyzed separately.
Interestingly, although branch-site tests for positive selection (test 2) were negative for all groups, site tests for positive selection for each group analyzed separately were significant for the ant expansion CSP group and OBP paralog group 2 (M1and2a and M7-M8 LRTs, P < 0.05 for all comparisons).
At each study site, two midwives were trained for 2 days on study procedures, facts on HBV infections and transmissions, counselling, safety issues, sample collection and transportation as well as site testing for HBsAg.
Locus by locus and site by site tests for Hardy-Weinberg equilibrium (HWE) denoted 9 out of 72 comparisons out of equilibrium (Additional file 1: Table S1), six of them were in LM.
P -values represent the significance of positive selection inferred by the branch-site test for positive selection.
The filtered MSAs and guide trees were also provided as input for the branch-site test for positive selection of Zhang et al.[ 42].
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